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Biomolecular Machines Research

Active Research Molecular Motors Computational Biology Biophysics

Our Biomolecular Machines research program investigates the fundamental physics and mechanics of biological molecular motors, with a focus on understanding how these nanoscale machines convert chemical energy into mechanical work. Our research combines theoretical modeling, computational simulations, and experimental validation to explore the intricate dynamics of cellular transport systems.

Research Focus Areas

Molecular Motors & Transport

Kinesin and Myosin Dynamics

Investigating how molecular motors like kinesin and myosin generate force and movement along cytoskeletal filaments. Our research examines motor protein mechanics, energy conversion efficiency, and collective motor behaviors.

Microtubule Mechanics

Cytoskeletal Dynamics

Studying the mechanical properties of microtubules and their interactions with motor proteins. We focus on filament persistence, gliding mechanics, and the relationship between structure and function in cellular transport.

Biosensor Applications

Technology Development

Developing biomolecular motor-powered biosensors and understanding how motor defects impact device performance. Our work bridges fundamental biology with practical nanotechnology applications.

Computational Modeling

Simulation & Theory

Creating mathematical models and computational simulations to predict molecular motor behavior, optimize biosensor designs, and understand complex transport phenomena in biological systems.

Current Research Projects

Microtubule-Kinesin Dynamics

Our latest research investigates the active spiralling behavior of microtubules driven by kinesin motors. This work reveals new insights into how molecular motors can induce complex three-dimensional motion patterns in cytoskeletal filaments.

Key Findings:

  • Novel spiral motion patterns in kinesin-driven microtubules
  • Relationship between motor density and spiralling behavior
  • Applications for understanding cellular organization

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Research Publications

Recent Publications (2022-2025)

  1. Active spiralling of microtubules driven by kinesin motors (2025)

    Scientific Reports | DOI: 10.1038/s41598-025-03384-y

    Investigation of novel spiral motion patterns in kinesin-driven microtubules and their implications for cellular organization.

  2. Linking path and filament persistence lengths of microtubules gliding over kinesin (2022)

    Scientific Reports | DOI: 10.1038/s41598-022-06941-x

    Quantitative analysis of the relationship between different persistence measures in microtubule-motor systems.

  3. Effects of defective motors on the active transport in biosensors powered by biomolecular motors (2022)

    Biosensors and Bioelectronics | DOI: 10.1016/j.bios.2022.114011

    Comprehensive study of how motor protein defects impact the performance of molecular motor-powered biosensors.

  4. Motility resilience of molecular shuttles against defective motors (2022)

    IEEE Transactions on NanoBioscience | DOI: 10.1109/tnb.2022.3170562

    Analysis of resilience mechanisms in molecular transport systems under impaired motor conditions.

  5. Modelling and Simulation of Biosensors Driven by Myosin Motors (2022)

    Zenodo | DOI: 10.5281/ZENODO.5745872

    Computational modeling framework for understanding myosin-powered biosensor systems.

Research Methodologies

Theoretical Modeling

Mathematical Frameworks

  • Stochastic process modeling
  • Statistical mechanics approaches
  • Kinetic theory applications
  • Multi-scale modeling techniques

Computational Simulation

Simulation Tools

  • Molecular dynamics simulations
  • Monte Carlo methods
  • Brownian dynamics modeling
  • Custom simulation environments

Data Analysis

Quantitative Methods

  • Statistical analysis of transport data
  • Image analysis of gliding assays
  • Parameter estimation techniques
  • Machine learning applications

Experimental Validation

Laboratory Techniques

  • Microtubule gliding assays
  • Single molecule tracking
  • Fluorescence microscopy
  • Biosensor performance testing

Future Directions

Our research continues to explore new frontiers in biomolecular machine physics:

Emerging Research Areas

  • Collective Motor Behavior: Understanding how multiple motors work together in cellular transport
  • Motor-Cargo Interactions: Investigating how cargo affects motor protein dynamics
  • Synthetic Biology Applications: Designing artificial molecular machines based on biological principles
  • Disease Mechanisms: Exploring how motor protein dysfunction contributes to neurodegenerative diseases

Technology Development

  • Next-Generation Biosensors: Developing more robust and efficient molecular motor-powered devices
  • Computational Platforms: Creating advanced simulation tools for biomolecular machine research
  • Diagnostic Applications: Translating fundamental research into clinical diagnostic technologies

Collaboration & Impact

Our biomolecular machines research program collaborates with leading institutions worldwide and contributes to both fundamental understanding and practical applications in biotechnology and medicine. Our work has implications for:

  • Understanding cellular transport mechanisms
  • Developing novel biosensing technologies
  • Creating therapeutic targets for motor protein diseases
  • Advancing nanotechnology applications
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